PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G3293
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family YABBY
Protein Properties Length: 199aa    MW: 22862.2 Da    PI: 9.3208
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G3293genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY177.48.5e-5571605170
        YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekls 102
                  s++eq+Cy+ Cn Cn ilav+vP ++lf++vtvrCG Ct+l s+n+a + q +  ++         ++ +  ++e  ++   ++++ +++  +  ++ 
  Gh_D05G3293   7 SAPEQLCYIPCNLCNIILAVNVPCSCLFETVTVRCGQCTNLCSINMAASFQSRGGKEI--------QVPNYTSSEYRIELGSSSSKGKNKLPKRPRIM 96 
                  789****************************************999998888777664........34444444444444444333333333333333 PP

        YABBY 103 enedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                  + +++e      v+rPP+kr r+Ps yn+fikeeiqrik +nPdishreafs+aaknWa fP+ihfgl
  Gh_D05G3293  97 NTTTQER----VVNRPPDKRHRAPSLYNQFIKEEIQRIKLNNPDISHREAFSTAAKNWARFPHIHFGL 160
                  3333333....369****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.2E-628160IPR006780YABBY protein
SuperFamilySSF470951.26E-6100153IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MSSLNNSAPE QLCYIPCNLC NIILAVNVPC SCLFETVTVR CGQCTNLCSI NMAASFQSRG  60
GKEIQVPNYT SSEYRIELGS SSSKGKNKLP KRPRIMNTTT QERVVNRPPD KRHRAPSLYN  120
QFIKEEIQRI KLNNPDISHR EAFSTAAKNW ARFPHIHFGL MLETATQPKL NDVSNDFIFK  180
VYNYVFNFTF FFLLMHERN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.216591e-180boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5267817e-40HQ526781.1 Gossypium herbaceum clone NBRI_A_1939 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441201.11e-127PREDICTED: axial regulator YABBY 5-like isoform X2
SwissprotQ8GW465e-75YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A0D2SEH01e-126A0A0D2SEH0_G
STRINGVIT_11s0016g05590.t014e-83(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55382649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.22e-73YABBY family protein